Update API documentation for database-based configuration

- Fix config_id references to use integers instead of file paths
- Update scan delete response format to include scan_id field
- Add missing read_only field to Settings API responses
- Add missing template fields to Webhook responses
- Correct endpoint count from 80+ to 65+

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

docs/API_REFERENCE.md

@@ -720,7 +720,7 @@ Retrieve a paginated list of scans with optional status filtering.
       "duration": 125.5,
       "status": "completed",
       "title": "Production Network Scan",
-      "config_id": "/app/configs/production.yaml",
+      "config_id": 1,
       "triggered_by": "manual",
       "started_at": "2025-11-14T10:30:00Z",
       "completed_at": "2025-11-14T10:32:05Z"
@@ -731,7 +731,7 @@ Retrieve a paginated list of scans with optional status filtering.
       "duration": 98.2,
       "status": "completed",
       "title": "Development Network Scan",
-      "config_id": "/app/configs/dev.yaml",
+      "config_id": 2,
       "triggered_by": "scheduled",
       "started_at": "2025-11-13T15:00:00Z",
       "completed_at": "2025-11-13T15:01:38Z"
@@ -793,7 +793,7 @@ Retrieve complete details for a specific scan, including all sites, IPs, ports,
   "duration": 125.5,
   "status": "completed",
   "title": "Production Network Scan",
-  "config_id": "/app/configs/production.yaml",
+  "config_id": 1,
   "json_path": "/app/output/scan_report_20251114_103000.json",
   "html_path": "/app/output/scan_report_20251114_103000.html",
   "zip_path": "/app/output/scan_report_20251114_103000.zip",
@@ -968,7 +968,8 @@ Delete a scan and all associated files (JSON, HTML, ZIP, screenshots).
 **Success Response (200 OK):**
 ```json
 {
-  "message": "Scan 42 deleted successfully"
+  "scan_id": 42,
+  "message": "Scan deleted successfully"
 }
 ```
 
@@ -1111,7 +1112,7 @@ Retrieve a list of all schedules with pagination and filtering.
     {
       "id": 1,
       "name": "Daily Production Scan",
-      "config_id": "/app/configs/prod-scan.yaml",
+      "config_id": 1,
       "cron_expression": "0 2 * * *",
       "enabled": true,
       "created_at": "2025-11-01T10:00:00Z",
@@ -1157,7 +1158,7 @@ Retrieve details for a specific schedule including execution history.
 {
   "id": 1,
   "name": "Daily Production Scan",
-  "config_id": "/app/configs/prod-scan.yaml",
+  "config_id": 1,
   "cron_expression": "0 2 * * *",
   "enabled": true,
   "created_at": "2025-11-01T10:00:00Z",
@@ -1201,7 +1202,7 @@ Create a new scheduled scan.
 ```json
 {
   "name": "Daily Production Scan",
-  "config_id": "/app/configs/prod-scan.yaml",
+  "config_id": 1,
   "cron_expression": "0 2 * * *",
   "enabled": true
 }
@@ -1215,7 +1216,7 @@ Create a new scheduled scan.
   "schedule": {
     "id": 1,
     "name": "Daily Production Scan",
-    "config_id": "/app/configs/prod-scan.yaml",
+    "config_id": 1,
     "cron_expression": "0 2 * * *",
     "enabled": true,
     "created_at": "2025-11-01T10:00:00Z"
@@ -1236,7 +1237,7 @@ Create a new scheduled scan.
 ```bash
 curl -X POST http://localhost:5000/api/schedules \
   -H "Content-Type: application/json" \
-  -d '{"name":"Daily Scan","config_id":"/app/configs/prod.yaml","cron_expression":"0 2 * * *"}' \
+  -d '{"name":"Daily Scan","config_id":1,"cron_expression":"0 2 * * *"}' \
   -b cookies.txt
 ```
 
@@ -1270,7 +1271,7 @@ Update an existing schedule.
   "schedule": {
     "id": 1,
     "name": "Updated Schedule Name",
-    "config_id": "/app/configs/prod-scan.yaml",
+    "config_id": 1,
     "cron_expression": "0 3 * * *",
     "enabled": false,
     "updated_at": "2025-11-15T10:00:00Z"
@@ -1512,7 +1513,7 @@ Get historical trend data for scans with the same configuration.
   ],
   "labels": ["2025-11-10 12:00", "2025-11-15 12:00"],
   "port_counts": [25, 26],
-  "config_id": "/app/configs/prod-scan.yaml"
+  "config_id": 1
 }
 ```
 
@@ -1632,7 +1633,8 @@ Retrieve a specific setting by key.
 {
   "status": "success",
   "key": "smtp_server",
-  "value": "smtp.gmail.com"
+  "value": "smtp.gmail.com",
+  "read_only": false
 }
 ```
 
@@ -2342,6 +2344,9 @@ List all configured webhooks with pagination.
       "severity_filter": ["critical", "warning"],
       "timeout": 10,
       "retry_count": 3,
+      "template": null,
+      "template_format": "json",
+      "content_type_override": null,
       "created_at": "2025-11-18T10:00:00Z",
       "updated_at": "2025-11-18T10:00:00Z"
     }
@@ -2393,6 +2398,9 @@ Get details for a specific webhook.
     "severity_filter": ["critical"],
     "timeout": 10,
     "retry_count": 3,
+    "template": null,
+    "template_format": "json",
+    "content_type_override": null,
     "created_at": "2025-11-18T10:00:00Z",
     "updated_at": "2025-11-18T10:00:00Z"
   }
@@ -2475,6 +2483,9 @@ Create a new webhook configuration.
     "custom_headers": null,
     "timeout": 10,
     "retry_count": 3,
+    "template": null,
+    "template_format": "json",
+    "content_type_override": null,
     "created_at": "2025-11-18T10:00:00Z"
   }
 }
@@ -2577,6 +2588,9 @@ Update an existing webhook configuration.
     "custom_headers": null,
     "timeout": 15,
     "retry_count": 3,
+    "template": null,
+    "template_format": "json",
+    "content_type_override": null,
     "updated_at": "2025-11-18T11:00:00Z"
   }
 }
@@ -3310,9 +3324,9 @@ API versioning will be implemented in future releases. The API is considered sta
 - **Webhooks API** - Webhook management, delivery tracking, authentication support, retry logic
 
 ### Endpoint Count
-- Total endpoints: 80+
+- Total endpoints: 65+
-- Authenticated endpoints: 75+
+- Authenticated endpoints: 60+
-- Public endpoints: 5 (login, setup, health checks)
+- Public endpoints: 5 (login, setup, health checks for scans/schedules/settings/alerts/webhooks)
 
 ---