Implement 6 new agent tools — write_file, make_dir, delete_file,
str_replace, patch_apply, run_command — bringing the agent from
read-only observer to active code modifier. All write/shell operations
are gated through the existing permissions service.
Also fix a bug where qwen3.5 thinking mode produces reasoning tokens
but no content after tool results, causing the agent to silently exit.
The loop now detects reasoning-only responses, retries twice, then
injects a nudge message to break the model out of its thinking loop.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Implement the core autonomy layer — AgentLoop streams LLM responses,
parses tool calls, executes them with permission checks, feeds results
back, and repeats until the task completes or finish is called.
- Add FinishTool for explicit loop termination
- Add tools parameter to LLMClient.stream_chat() for function calling
- Add compact tool result display (status line, not full output)
- Refactor REPL to delegate to AgentLoop.run_turn()
- Fix Ollama null content rejection (always send content as string)
- Add finish to auto_approve permissions
- 9 unit tests for agent loop (34 total, zero regressions)
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
